Genomic data sets

Welcome to the MCM LTER genetic/genomic data resource. This is our initial attempt to make molecular data associated with our project easily accessible to the public. We hope to make this resource more integrated with our database and the LTER network NIS as more data become available. We encourage users to help us improve this site by telling us how to make this site more useful to them. Note that not all data listed below are publicly available if they are within the 2 year embargo or have not been published yet. However, please contact the submitter if you have an immediate need for the data.

The following list of links will direct you to the NCBI hosted BioProject pages corresponding to MCMLTER research projects and to the MG-RAST hosted Metagenome pages for cross-biomes for metagenomic analyses. The last two groups direct you to the sequence files (fasta and genbank) associated with the book chapter by Takacs-Vesbach titled Factors promoting microbial diversity in the McMurdo Dry Valleys and Zeglin's et al. study titled Bacterial community structure along moisture gradients in the parafluvial sediments of two ephemeral desert streams.

21 matching data sets (displaying 1 - 21)
NCBI BioProject
Antarctic soil watering experiment across a natural salinity gradient
Bacterial community composition of divergent soil habitats in a polar desert Metagenome
Characterization of Growing Bacterial Populations in McMurdo Dry Valley (Antarctica) Soils through Stable Isotope Probing with 18O-water
Early melt ionic pulses within cryoconite holes of the McMurdo Dry Valleys, Antarctica insight into microbial nutrient cycling and ecosystem function Targeted Locus
Habitability of Antarctic lakes and detectability of microbial life in icy environments by autonomous year-round instrumentation
McMurdo Dry Valley (Antarctica) Stream Microbial Mat targeted loci environmental
McMurdo Dry Valley Soil Metagenomes
Microbial diversity of meromictic lakes of the McMurdo Dry Valleys, Antarctica Targeted Locus
Microbial mat and sediment from Antarctic Dry Valley streams
Scale-dependent soil microbial diversity patterns along an elevational gradient in an extreme environment Targeted Locus
Stable isotope probing analysis of MDV soil samples that were amended with salt, carbon or nitrogen, or in which the pH of the soil was manipulated
The Role of Snow Patches on the Spatial Distribution of Soil Microbial Communities and Biogeochemical Cycling in the Antarctic Dry Valleys
Genbank
Bacterial community structure along moisture gradients in two ephemeral desert streams (Pub DOI: 10.1007/s00248-010-9782-7)
Fasta
Bacterial community structure along moisture gradients in two ephemeral desert streams (Pub DOI: 10.1017/CBO9780511712258.008)
MG-Rast
Desert at Antarctic McMurdo Dry Valleys: Taylor Valley, Lake Bonney
Desert at Antarctic McMurdo Dry Valleys: Taylor Valley, Lake Hoare
Desert soils at Antarctic McMurdo Dry Valleys: Garwood valley
Desert soils at Antarctic McMurdo Dry Valleys: Taylor Valley, Lake Bonney
Desert soils at Antarctic McMurdo Dry Valleys: Taylor Valley, Lake Fryxell
Desert soils at Antarctic McMurdo Dry Valleys: Wright Valley
Microbial Community Responses to Increased Water and Organic Matter in the Arid Soils of the McMurdo Dry Valleys, Antarctica (metatranscriptomics)