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Data
»
Operational taxonomic unit (OTU) table characterizing water track and adjacent soil microbial communities in Taylor Valley, Antarctica during the 2012-13 austral summer
SOILS_WT_OTU
OTU Table
File:
SOILS_WT_OTU.csv
(214.48 KB)
...
or query the dataset by variables and dates of interest:
Variables
DATASET_CODE
Label:
Dataset code
Definition:
Internal dataset code
Type:
Nominal
Missing values:
None specified
OTU_ID
Label:
Operational Taxonomic Unit ID
Definition:
The operational taxonomic unit ID (e.g., “OTU_137”).
Type:
Nominal
Missing values:
None specified
A1SLH
Label:
Sample A1SLH
Definition:
Sample A1SLH, where "A1" represents sample 1, collected off the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A2SLH
Label:
Definition:
Sample A2SLH, where "A2" represents sample 2, collected off the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A3SGG
Label:
Sample A3SGG
Definition:
Sample A3SGG, where "A3" represents sample 3, collected off the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A4WTGG
Label:
Sample A4WTGG
Definition:
Sample A4WTGG, where "A4" represents sample 4, collected on the water track in Goldman Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A5SLH
Label:
Sample A5SLH
Definition:
Sample A5SLH, where "A5" represents sample 5, collected off the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A6WTLH
Label:
Sample A6WTLH
Definition:
Sample A6WTLH, where "A6" represents sample 6, collected on the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A7WTLH
Label:
Sample A7WTLH
Definition:
Sample A7WTLH, where "A7" represents sample 7, collected on the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A8SGG
Label:
Sample A8SGG
Definition:
Sample A8SGG, where "A8" represents sample 8, collected off the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A9WTLH
Label:
Sample A9WTLH
Definition:
Sample A9WTLH, where "A9" represents sample 9, collected on the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A10WTLH
Label:
Sample A10WTLH
Definition:
Sample A10WTLH, where "A10" represents sample 10, collected on the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A11WTGG
Label:
Sample A11WTGG
Definition:
Sample A11WTGG, where "A11" represents sample 11, collected on the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A12SLH
Label:
Sample A12SLH
Definition:
Sample A12SLH, where "A12" represents sample 12, collected off the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A13WTLH
Label:
Sample A13WTLH
Definition:
Sample A13WTLH, where "A13" represents sample 13, collected on the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A14SLH
Label:
Sample A14SLH
Definition:
Sample A14SLH, where "A14" represents sample 14, collected off the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A15WTGG
Label:
Sample A15WTGG
Definition:
Sample A15WTGG, where "A15" represents sample 15, collected on the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A16WTGG
Label:
Sample A16WTGG
Definition:
Sample A16WTGG, where "A16" represents sample 16, collected on the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A17WTLH
Label:
Sample A17WTLH
Definition:
Sample A17WTLH, where "A17" represents sample 17, collected on the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A18SLH
Label:
Sample A18SLH
Definition:
Sample A18SLH, where "A18" represents sample 18, collected off the water track in Lake Hoare Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A19SGG
Label:
Sample A19SGG
Definition:
Sample A19SGG, where "A19" represents sample 19, collected off the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
A20SGG
Label:
Sample A20SGG
Definition:
Sample A20SGG, where "A20" represents sample 20, collected off the water track in Goldman Glacier Basin. Values represent the number of raw (i.e., not rarefied) sequence reads for each OTU within this sample.
Type:
Nominal
Missing values:
None specified
TAXA_DOMAIN
Label:
Taxonomic Domain
Definition:
Taxonomic Domain of the OTU (e.g., “k_Bacteria”). Unclassified values indicated by “Unclassified”.
Type:
Nominal
Missing values:
None specified
TAXA_PHYLUM
Label:
Taxonomic Phylum
Definition:
Taxonomic Phylum of the OTU (i.e. “p_Proteobacteria”). Missing values indicated by blank cell.
Type:
Nominal
Missing values:
None specified
TAXA_CLASS
Label:
Taxonomic Class
Definition:
Taxonomic Class of the OTU (e.g., “c_Gammaproteobacteria”). Missing values indicated by blank cell, or “c__” if class could not be identified.
Type:
Nominal
Missing values:
None specified
TAXA_ORDER
Label:
Taxonomic Order
Definition:
Taxonomic Order of the OTU (e.g., “o_Pseudomonadales”). Missing values indicated by blank cell, or “o__” if order could not be identified.
Type:
Nominal
Missing values:
None specified
TAXA_FAMILY
Label:
Taxonomic Family
Definition:
Taxonomic Family of the OTU (e.g., “f_Pseudomonadaceae”). Missing values indicated by blank cell, or “f__” if family could not be identified.
Type:
Nominal
Missing values:
None specified
TAXA_GENUS
Label:
Taxonomic Genus
Definition:
Taxonomic Genus of the OTU (e.g., “g_Pseudomonas”). Missing values indicated by blank cell, or “g__” if genus could not be identified.
Type:
Nominal
Missing values:
None specified
TAXA_SPECIES
Label:
Taxonomic Species
Definition:
Taxonomic Species of the OTU (e.g., “s_viridiflava”). Missing values indicated by blank cell, or “s__” if species could not be identified.
Type:
Nominal
Missing values:
None specified
Data Source Details
Header lines:
1
Orientation:
Column
Quote character:
"
Field delimiter:
,