Scottnema lindsayae LSU sequences

List of each individual Scottnema sanger sequenced for 28S large subunit ribosomal ribonucleic acid (LSU) and the corresponding aligned and trimmed LSU sequence.

File: 

mcmlter-soils-jackson-soils_scott_lsuseq-20230411.csv (30.74 KB)

...or query the dataset by variables and dates of interest:

Variables
dataset_code
  • Label: Dataset Code
  • Definition: Internal dataset code.
  • Type: Nominal
  • Missing values: None specified
sequence_id
  • Label: Sequence ID
  • Definition: Individual Scottnema lindsayae sequence identifier.
  • Type: Nominal
  • Missing values: None specified
site
  • Label: Site Name
  • Definition: Name of the location where soils were sampled.
  • Type: Nominal
  • Missing values: None specified
species
  • Label: Species
  • Definition: Species identity.
  • Type: Nominal
  • Missing values: None specified
seq_lsu
  • Label: Sequence
  • Definition: Assembled sequences of a portion of the 28S large subunit ribosomal ribonucleic acid (LSU) gene.
  • Type: Nominal
  • Missing values: None specified
ncbi_accn
  • Label: NCBI Accession Number
  • Definition: NCBI nucleotide accession number corresponding with each sequence. https://www.ncbi.nlm.nih.gov/nuccore/?term=OP692666:OP692695[accn]
  • Type: Nominal
  • Missing values: None specified
Data Source Details

Header lines: 

1

Orientation: 

Column

Quote character: 

"

Field delimiter: 

,

Record delimiter: 

\n